Like I've said, you need to use CO and ANA. Neither is perfect.
If you call ANA I'd bet they can find those flights that CO is showing though.
I played around with the option to put in the stopover city and found some of the flights i found on CO.
Now i realize why ANA wasnt originally finding them.
The ones that ANA was finding would have been 17,000 miles for the RT ORD-YOW.
When i searched on my own and put in EWR or DCA as a stopover, it increased the cost to 22,000 miles.
CO meanwhile has all those flights at 25,000 even the ones that stop in EWR and DCA.
I am assuming this is because ANA is calculating the distance i am flying while CO is just calculating it as a standard domestic ticket.