Guess you can say the same for any neis.
Sure.
But when a yid believes that what a certain person or group is 100% against hashem's will, and yet still succeeds, what is he supposed to think?
Either (i) he was wrong, or (ii) get some answer to it.
And that's what he did.
Let me ask you this question, when the Russians arrested the Tanya, does that mean hashem was against the Tanya? definitely not. Same here.